Package: bsam 1.1.3

bsam: Bayesian State-Space Models for Animal Movement

Tools to fit Bayesian state-space models to animal tracking data. Models are provided for location filtering, location filtering and behavioural state estimation, and their hierarchical versions. The models are primarily intended for fitting to ARGOS satellite tracking data but options exist to fit to other tracking data types. For Global Positioning System data, consider the 'moveHMM' package. Simplified Markov Chain Monte Carlo convergence diagnostic plotting is provided but users are encouraged to explore tools available in packages such as 'coda' and 'boa'.

Authors:Ian Jonsen [aut, cre], Sophie Bestley [ctb], Simon Wotherspoon [ctb], Michael Sumner [ctb], Joanna Mills Flemming [ctb]

bsam_1.1.3.tar.gz
bsam_1.1.3.zip(r-4.7-any)bsam_1.1.3.zip(r-4.6-any)bsam_1.1.3.zip(r-4.5-any)
bsam_1.1.3.tgz(r-4.6-any)bsam_1.1.3.tgz(r-4.5-any)
bsam_1.1.3.tar.gz(r-4.7-any)bsam_1.1.3.tar.gz(r-4.6-any)
bsam_1.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bsam/json (API)

# Install 'bsam' in R:
install.packages('bsam', repos = c('https://ianjonsen.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ianjonsen/bsam/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • ellie1 - Elephant seal Argos satellite data
  • ellie2 - Elephant seal Argos satellite data

On CRAN:

Conda:

cran-downloadsjagscpp

4.52 score 19 stars 35 scripts 194 downloads 12 mentions 13 exports 38 dependencies

Last updated from:7d191f532d. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE127
source / vignettesOK166
linux-releaseNOTE139
macos-releaseNOTE101
macos-oldrelNOTE126
windows-develNOTE102
windows-releaseNOTE73
windows-oldrelNOTE99
wasm-releaseOK93

Exports:dat4jagsdiag_ssmdiagSSMfit_ssmfitSSMget_summaryhssmmap_ssmplot_fitplotSSMsimulatessmtpar

Dependencies:clicodacpp11dplyrexpmfarvergenericsggplot2gluegridExtragtableisobandlabelinglatticelifecyclelubridatemagrittrMatrixmsmmvtnormpillarpkgconfigR6RColorBrewerrjagsrlangrworldxtraS7scalesspsurvivaltibbletidyselecttimechangeutf8vctrsviridisLitewithr