Package: bsam 1.1.3

bsam: Bayesian State-Space Models for Animal Movement

Tools to fit Bayesian state-space models to animal tracking data. Models are provided for location filtering, location filtering and behavioural state estimation, and their hierarchical versions. The models are primarily intended for fitting to ARGOS satellite tracking data but options exist to fit to other tracking data types. For Global Positioning System data, consider the 'moveHMM' package. Simplified Markov Chain Monte Carlo convergence diagnostic plotting is provided but users are encouraged to explore tools available in packages such as 'coda' and 'boa'.

Authors:Ian Jonsen [aut, cre], Sophie Bestley [ctb], Simon Wotherspoon [ctb], Michael Sumner [ctb], Joanna Mills Flemming [ctb]

bsam_1.1.3.tar.gz
bsam_1.1.3.zip(r-4.5)bsam_1.1.3.zip(r-4.4)bsam_1.1.3.zip(r-4.3)
bsam_1.1.3.tgz(r-4.4-any)bsam_1.1.3.tgz(r-4.3-any)
bsam_1.1.3.tar.gz(r-4.5-noble)bsam_1.1.3.tar.gz(r-4.4-noble)
bsam_1.1.3.tgz(r-4.4-emscripten)bsam_1.1.3.tgz(r-4.3-emscripten)
bsam.pdf |bsam.html
bsam/json (API)
NEWS

# Install 'bsam' in R:
install.packages('bsam', repos = c('https://ianjonsen.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ianjonsen/bsam/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • ellie1 - Elephant seal Argos satellite data
  • ellie2 - Elephant seal Argos satellite data

On CRAN:

cran-downloadsjags

13 exports 15 stars 3.16 score 43 dependencies 12 mentions 28 scripts 927 downloads

Last updated 3 months agofrom:7d191f532d. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 02 2024
R-4.5-winNOTESep 02 2024
R-4.5-linuxNOTESep 02 2024
R-4.4-winNOTESep 02 2024
R-4.4-macNOTESep 02 2024
R-4.3-winNOTESep 02 2024
R-4.3-macNOTESep 02 2024

Exports:dat4jagsdiag_ssmdiagSSMfit_ssmfitSSMget_summaryhssmmap_ssmplot_fitplotSSMsimulatessmtpar

Dependencies:clicodacolorspacecpp11dplyrexpmfansifarvergenericsggplot2gluegridExtragtableisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmsmmunsellmvtnormnlmepillarpkgconfigR6RColorBrewerrjagsrlangrworldxtrascalesspsurvivaltibbletidyselecttimechangeutf8vctrsviridisLitewithr